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Nonprofiteer
← J CRAIG VENTER INSTITUTE INC

Form 990 for tax year 2023

Filed by J CRAIG VENTER INSTITUTE INC.

Totals

Total revenue
$15,132,739
Total expenses
$21,845,674
Contributions and grants received
$15,104,824
Grants paid
$2,483,399
Program service revenue
$0
Investment income
$18,333
Other revenue
$9,582
Total assets, end of year
$48,982,028
Total liabilities, end of year
$10,026,647
Net assets or fund balances, end of year
$38,955,381
Program services expenses (Part IX)
$11,268,889
Management and general expenses
$10,148,387
Fundraising expenses
$428,398
Program service expenses (Part III)
$11,268,889

Program services were 51.6% of total expenses calculated — Part IX's program-services column over total expenses, both as filed.

Line items

Every line the filer filed in Parts VIII, IX and X, as filed and in filed order. Blank columns are left out, and the lines are not forced to add up to the totals above.

Revenue

Part VIII, the statement of revenue.

  • 1e · Government grants (contributions)

    $12,889,795

  • 1f · All other contributions, gifts and grants

    $2,215,029

  • 3 · Investment income

    total $627,098 · excluded $627,098

  • 7a · Gross sales of assets other than inventory

    securities $4,681,723

  • 7b · Less cost or other basis and sales expenses

    securities $5,248,840 · other assets $41,648

  • 7c · Gain or loss

    securities -$567,117 · other assets -$41,648

  • 7d · Net gain or loss

    total -$608,765 · excluded -$608,765

  • 11a · Other revenue: K-1 PASSTHROUGH

    total $9,582 · unrelated business $9,582

  • 11e · Other revenue, total

    $9,582

Functional expenses

Part IX, the statement of functional expenses.

  • 1 · Grants to domestic organizations and governments

    total $2,412,163 · program services $2,412,163

  • 3 · Grants to foreign organizations and individuals

    total $71,236 · program services $71,236

  • 5 · Compensation of officers, directors and key employees

    total $3,002,758 · management and general $3,002,758

  • 7 · Other salaries and wages

    total $9,486,427 · program services $6,126,044 · management and general $3,005,073 · fundraising $355,310

  • 8 · Pension plan contributions

    total $273,405 · program services $168,167 · management and general $95,483 · fundraising $9,755

  • 9 · Other employee benefits

    total $57,877 · program services $49,956 · management and general $5,024 · fundraising $2,897

  • 10 · Payroll taxes

    total $742,525 · program services $367,437 · management and general $353,777 · fundraising $21,311

  • 11b · Fees: legal

    total $130,759 · management and general $130,759

  • 11c · Fees: accounting

    total $158,050 · management and general $158,050

  • 11f · Fees: investment management

    total $104,695 · management and general $104,695

  • 11g · Fees: other

    total $290,985 · program services $130,693 · management and general $160,292

  • 13 · Office expenses

    total $103,996 · program services $81,844 · management and general $18,454 · fundraising $3,698

  • 14 · Information technology

    total $698,310 · program services $184,783 · management and general $513,527

  • 16 · Occupancy

    total $1,196,618 · program services $300,737 · management and general $890,702 · fundraising $5,179

  • 17 · Travel

    total $172,991 · program services $96,071 · management and general $60,995 · fundraising $15,925

  • 22 · Depreciation, depletion and amortization

    total $415,542 · program services $138,190 · management and general $277,352

  • 23 · Insurance

    total $392,982 · management and general $392,982

  • 24a · Other expenses: LAB EQUIPMENT AND SUPPL

    total $1,312,681 · program services $1,054,937 · management and general $257,744

  • 24b · Other expenses: ALL OTHER EXPENSES

    total $821,674 · program services $86,631 · management and general $720,720 · fundraising $14,323

Balance sheet

Part X, book values.

  • 1 · Cash, non-interest-bearing

    beginning of year $5,102,233 · end of year $2,971,911

  • 2 · Savings and temporary cash investments

    beginning of year $395,507 · end of year $1,274,704

  • 3 · Pledges and grants receivable

    beginning of year $15,575,492 · end of year $13,669,583

  • 4 · Accounts receivable

    beginning of year $7,507 · end of year $11,598

  • 9 · Prepaid expenses and deferred charges

    beginning of year $311,397 · end of year $576,720

  • 10a · Land, buildings and equipment: cost or other basis

    $14,973,953

  • 10b · Land, buildings and equipment: accumulated depreciation

    $13,367,545

  • 10c · Land, buildings and equipment, net

    beginning of year $1,858,655 · end of year $1,606,408

  • 11 · Investments: publicly traded securities

    beginning of year $27,086,686 · end of year $23,360,705

  • 12 · Investments: other securities

    beginning of year $689,927 · end of year $553,787

  • 15 · Other assets

    beginning of year $5,280,363 · end of year $4,956,612

  • 17 · Accounts payable and accrued expenses

    beginning of year $2,689,803 · end of year $2,674,079

  • 19 · Deferred revenue

    beginning of year $2,973,249 · end of year $4,052,856

  • 25 · Other liabilities

    beginning of year $3,739,563 · end of year $3,299,712

  • 27 · Net assets without donor restrictions

    beginning of year $34,764,101 · end of year $29,780,872

  • 28 · Net assets with donor restrictions

    beginning of year $12,141,051 · end of year $9,174,509

Mission and programs · 2023

Mission

J. CRAIG VENTER INSTITUTE (JCVI) IS AN INDEPENDENT 501(C)(3) NONPROFIT ORGANIZATION ADVANCING THE SCIENCE OF GENOMICS COMMITTED TO ACCELERATING FOUNDATIONAL SCIENTIFIC RESEARCH TO DRIVE ADVANCES IN HUMAN HEALTH AND ENVIRONMENTAL SUSTAINABILITY. THIS PAST YEAR JCVI COMMITTED RESEARCH EFFORTS IN HUMAN HEALTH, ENVIRONMENTAL SUSTAINABILITY, SYNTHETIC BIOLOGY, AND SOFTWARE TOOLS AND TECHNOLOGY.

Activities or mission (Part I)

JCVI IS ADVANCING THE SCIENCE OF GENOMICS THROUGH BOLD INNOVATIONS. OUR MISSION IS TO UNDERSTAND MORE ABOUT THE BIOLOGICAL WORLD, AND TO DEVELOP UNIQUE INSIGHTS AND ANSWERS ABOUT DISEASE, HEALTH, AND THE ENVIRONMENT FOR THE BENEFIT OF ALL.

  • Withheld by Nonprofiteer: this text may name a private individual.

    Expenses $8,738,224 · Grants $2,412,163

  • Withheld by Nonprofiteer: this text may name a private individual.

    Expenses $799,972

  • Withheld by Nonprofiteer: this text may name a private individual.

    Expenses $1,692,603 · Grants $71,236

  • OTHER: AS PART OF THEIR INAUGURAL GRANT CYCLE, THE CONRAD PREBYS FOUNDATION FUNDED THE INSTITUTES RESEARCH WORK IN BOTH CORONARY ARTERY DISEASE AND SARS-COV-2. HEART DISEASE IS THE LEADING CAUSE OF DEATH IN THE US AND CORONARY ARTERY DISEASE (CAD) IS THE MOST COMMON TYPE OF HEART DISEASE, KILLING ~366,000 PEOPLE ANNUALLY IN THE US. ABOUT 6.7% (18.2 MILLION) US ADULTS HAVE CAD AND ~20% OF DEATHS FROM CAD OCCUR BEFORE AGE 65. A LIST OF GENETIC FACTORS LINKED TO CAD HAS BEEN FOUND OVER THE LAST FEW DECADES. BUT THEY ONLY EXPLAIN A SMALL PORTION OF THE HERITABILITY IN CAD. TO BETTER UNDERSTAND THE GENETICS AND ETIOLOGY OF CAD AT GENOMIC LEVEL, MORE RARE GENETIC VARIANTS NEED TO BE INVESTIGATED. LED BY WEIZHONG LI, THIS PROJECT, ANALYZED THE WHOLE GENOME DEEP SEQUENCE DATA OF A LARGE COHORT OF ~1000 CAD PATIENTS. USING THE CLOUD-BASED GENOME ANALYSIS PIPELINE, HUNDREDS OF TERABYTES OF SEQUENCE DATA WERE PROCESSED AND MILLIONS OF VARIOUS TYPES OF GENETIC VARIANTS WERE IDENTIFIED. A LIST OF VARIANTS ARE FOUND TO BE ASSOCIATED WITH CAD AND THE EXTENT OF DISEASE IN CAD. BY USING MACHINE LEARNING APPROACHES, WE BUILT VERY ACCURATE PREDICTIVE MODELS FOR THE PREDICTION OF CAD RISKS AND DISEASE SEVERITY. EARLY WARNING SYSTEM FOR SARS-COV-2 IMMUNE ESCAPE PROJECT. NEUTRALIZING ANTIBODIES ELICITED AGAINST THE SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS (SARS-COV-2) SPIKE PROTEIN IS WIDELY ACCEPTED AS THE MAIN CORRELATE OF PROTECTION. TO BETTER UNDERSTAND THE ROLE OF ANTIBODIES IN NEUTRALIZATION AND PROTECTION, JCVI, LED BY RICHARD SCHEUERMANN, PHD, AND GENE TAN, PHD, IS CONSTRUCTING A PANEL OF CHIMERIC PSEUDOVIRUSES (BASED ON THE VESICULAR STOMATITIS VIRUS PLATFORM) THAT WE HYPOTHESIZE CAN REVEAL THE IMMUNOLOGICAL DOMINANT AND SUBDOMINANT ANTIGENIC REGIONS OF THE SPIKE PROTEIN. NOTABLY, OUR APPROACH CAN IDENTIFY SUBDOMINANT REGIONS WITHIN THE SPIKE THAT ARE HIGHLY CONSERVED EVEN AMONGST SARS-COV-2 VARIANTS OF CONCERN (VOCS). COVID19 CONTINUES TO IMPACT GLOBAL HEALTH, HIGHLIGHTING THE NEED TO DEVELOP NOVEL THERAPEUTICS. MARCELO FREIRE, PHD, AND HIS LABORATORY DISCOVERED THAT SALIVA IS A BIOFLUID IMPORTANT FOR MEASURING THE VIRUS BUT ALSO THE IMMUNE RESPONSE PRESENTING DIVERSE IMMUNE CELL POPULATIONS. WHITIN SALIVA, WE FIND VARIOUS ANTIVIRAL, ANTI-INFLAMMATORY AND ANTI-BACTERIAL FUNCTIONS. DIFFERENT FROM BLOOD, SALIVARY IMMUNE CELLS ARE IN DIRECT CONTACT WITH THE LIVE VIRUS. IN THIS PROPOSAL WE INVESTIGATED (I) THE COMPOSITION OF ANTIVIRAL IMMUNE CELLS, (II) THE PROTEIN SEQUENCE OF ANTIVIRAL MOLECULES DERIVED FROM INNATE IMMUNE CELLS, AND (III) THEIR MECHANISM OF ACTION. THE FREIRE LAB HAVE SUCCESSFULLY COLLECTED SAMPLES FROM COVID-19 AND HEALTHY CONTROL SAMPLES AND INITIATED SEQUENCING OF SALIVA CELLS IN HEALTH AND IN COVID-19. IN ADDITION, WE ALSO RECRUITED SAMPLES LONGITUDINALLY AT JCVI TO EVALUATE HEALTHY VERSUS DISEASE. TO DATE, WE COMPLETED IMMUNOGLOBULIN IMMUNOASSAYS OF ALL OUR SAMPLES INCLUDING INVESTIGATIONS TO CUSTOM ELISA ASSAYS FOR SARS-COV-2 ANTIGENS (RBD, S1, S2, NP PROTEINS). WE HAVE IDENTIFIED THAT SALIVARY IMMUNOGLOBULIN IGA AS HIGHLY SIGNIFICANT COMPARED TO BLOOD PLASMA LEVELS. SEVERAL MARKERS FROM IGG AND IGA RESPONSES WERE FOUND IN SALIVA AS WELL AS PLASMA. SIMPLE LINEAR REGRESSION MODEL VERIFIED SIGNIFICANT CORRELATIONS BETWEEN SALIVA AND PLASMA ANTIBODY RESPONSES, SPECIFICALLY FOR THE IGA (P=0.001), IGG (P=0.037), AND IGM (P=0.0054) SPECIFIC TO THE SARS-COV-2 RECEPTOR BINDING SITE (RBD). THESE ARE ANTIVIRAL MOLECULES THAT HAVE POTENTIAL TO BLOCK VIRAL ACTIVITY. TO TEST THIS FURTHER FROM OUR ASSAYS, JCVI PERFORMED A NEUTRALIZATION ASSAY AND COMPARATIVE ANALYSIS TO UNDERSTAND IF THESE MOLECULES HAVE A FUNCTIONAL RESPONSE. DESPITE THAT SALIVA CONTAINED ROBUST IGA RESPONSE TO THE SARS-COV-2, WHICH WAS EVEN HIGHER THAN PLASMA, MOST OF SALIVA SAMPLES DEMONSTRATED LEVEL OF NEUTRALIZATION OF VESICULAR STOMATITIS VIRUS (VSV) PSEUDOVIRUSES BEARING S OF SARS-COV-2 (RVSV-GFPG*SPIKE). IT WAS CONTRASTED WITH THAT THE PLASMA DISPLAYED A SIGNIFICANT LEVEL OF NEUTRALIZING ACTIVITY EVEN FROM HEALTHY INDIVIDUALS. THESE RESULTS SUGGEST THAT THE ORAL MUCOSAL IMMUNE COMPONENTS COOPERATE WITH SYSTEMIC IMMUNE RESPONSE IN RESPONSE TO THE SARS-COV-2 INFECTION. SALIVA AND PLASMA SAMPLES CONTAINED SIGNIFICANTLY HIGHER LEVELS OF SARS-COV-2 SPECIFIC ANTIBODIES THAN HEALTHY AND WE DISCOVERED MULTIPLE PEPTIDES PRESENT A ROLE AGAINST VIRAL PARTICLES. ULTIMATELY, THIS PROJECT AIMS TO MAP THE SALIVARY MOLECULAR CONTENT WHEN EXPOSED TO THE VIRUS. WE AIM PROVIDE TO THE SCIENTIFIC COMMUNITY A NEW LAYER OF IMMUNE RESPONSE COMPOSITION AND FUNCTION RELATED TO MUCOSAL LINING WHEN FACING VIRAL ATTACK. THIS WILL THEN GUIDE NEW CLINICAL APPROACHES WITH THE FORMATION OF THE THERAPEUTICS THAT EMULATE HOW AND WHY THE MUCOSAL TISSUES KEEP DISEASE IN CHECK. SANJAY VASHEE, PHD, COLLABORATING WITH INVESTIGATORS AT THE UNIVERSITY OF MARYLAND TO USE SYNTHETIC GENOMICS TO DEVELOP A SARS-COV-2 INFECTIOUS CLONE. THEY ARE PAIRING THIS WITH A RAPID, MODULAR REVERSE GENETIC SYSTEM TO ASSESS GENOMIC VARIANTS IDENTIFIED IN THE WEALTH OF GLOBAL SEQUENCING DATA, DEVELOP AND TEST VACCINE CANDIDATES, AND GENERATE NEEDED REAGENTS, INCLUDING FLUORESCENT AND TAGGED VIRUS STRAINS. MARCELO FREIRE, PHD, IS LEADING EFFORTS IN THE DEVELOPMENT OF A SALIVARY SEROLOGICAL AND IMMUNE TESTING. MONITORING SALIVA IMMUNITY PROVIDES NON-INVASIVE MOLECULAR INFORMATION, ESSENTIAL FOR DIAGNOSTICS, AND RESPONSE TO THERAPY DURING THE PANDEMIC. HIS LABORATORY IS COMPARING COVID-19 PATIENTS' BLOOD AND SALIVARY IMMUNOGLOBULINS LEVELS TO FIND BETTER WAYS TO EVALUATE IMMUNE RESPONSE TO SARS-COV-2.

    Expenses $38,090

As filed on the 2023 return. The filer continues this part on Schedule O, which is not shown here. A text marked withheld matched a screen for wording that may name a private individual, such as an honorific or "in memory of". Most of what it withholds names no one; it is withheld so that what does is never shown.

Listed in Part VII

  • Venter John Craig

    CHAIRMAN & CEO

    Total calculated
    $1,209,106
    From this org
    $1,190,386
    From related orgs
    $0
    Other
    $18,720
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $1,160,389
    Bonus
    $0
    Other
    $29,997
    Deferred
    $13,200
    Nontaxable benefits
    $5,520
    Filer's total
    $1,209,106
  • Kowalski Heather

    CHIEF OPERATING OFFICER

    Total calculated
    $378,687
    From this org
    $359,154
    From related orgs
    $0
    Other
    $19,533
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $341,154
    Bonus
    $0
    Other
    $18,000
    Deferred
    $13,200
    Nontaxable benefits
    $6,333
    Filer's total
    $378,687
  • Peake Antony G

    VP RESEARCH ADMINISTRATION

    Total calculated
    $310,032
    From this org
    $301,718
    From related orgs
    $0
    Other
    $8,314
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $278,322
    Bonus
    $0
    Other
    $23,396
    Deferred
    $8,314
    Nontaxable benefits
    $0
    Filer's total
    $310,032
  • Scheuermann Richard H

    DIRECTOR, LA JOLLA CAMPUS

    Total calculated
    $309,265
    From this org
    $282,405
    From related orgs
    $0
    Other
    $26,860
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $261,409
    Bonus
    $0
    Other
    $20,996
    Deferred
    $10,624
    Nontaxable benefits
    $16,236
    Filer's total
    $309,265
  • Mullen Jill

    SR. VP OF PHILANTHROPY

    Total calculated
    $308,758
    From this org
    $281,136
    From related orgs
    $0
    Other
    $27,622
    Hours/week
    32

    Schedule J breakdown matched by us

    Base
    $263,468
    Bonus
    $0
    Other
    $17,668
    Deferred
    $10,266
    Nontaxable benefits
    $17,356
    Filer's total
    $308,758
  • Yumul Mary

    VP OF HUMAN RESOURCES

    Total calculated
    $270,892
    From this org
    $256,429
    From related orgs
    $0
    Other
    $14,463
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $235,629
    Bonus
    $0
    Other
    $20,800
    Deferred
    $9,533
    Nontaxable benefits
    $4,930
    Filer's total
    $270,892
  • Stout Martin

    CHIEF TECHNOLOGY OFFICER

    Total calculated
    $233,838
    From this org
    $220,186
    From related orgs
    $0
    Other
    $13,652
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $213,427
    Bonus
    $0
    Other
    $6,759
    Deferred
    $6,206
    Nontaxable benefits
    $7,446
    Filer's total
    $233,838
  • Singh Indresh

    SR. SOFTWARE ENGINEER

    Total calculated
    $229,477
    From this org
    $217,234
    From related orgs
    $0
    Other
    $12,243
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $191,806
    Bonus
    $0
    Other
    $25,428
    Deferred
    $7,775
    Nontaxable benefits
    $4,468
    Filer's total
    $229,477
  • Stayeas Timothy

    NETWORK TEAM LEAD

    Total calculated
    $228,800
    From this org
    $214,596
    From related orgs
    $0
    Other
    $14,204
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $194,354
    Bonus
    $0
    Other
    $20,242
    Deferred
    $8,247
    Nontaxable benefits
    $5,957
    Filer's total
    $228,800
  • Fouts Derrick

    PROFESSOR

    Total calculated
    $219,311
    From this org
    $211,599
    From related orgs
    $0
    Other
    $7,712
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $181,599
    Bonus
    $0
    Other
    $30,000
    Deferred
    $7,712
    Nontaxable benefits
    $0
    Filer's total
    $219,311
  • Shadfan Aida

    VP OF FINANCE (THRU 09/23)

    Total calculated
    $210,755
    From this org
    $202,897
    From related orgs
    $0
    Other
    $7,858
    Hours/week
    40

    Schedule J breakdown matched by us

    Base
    $188,690
    Bonus
    $0
    Other
    $14,207
    Deferred
    $7,858
    Nontaxable benefits
    $0
    Filer's total
    $210,755
  • Adelson Julie

    VP, LEG. AFFRS/GENERAL COUNSEL

    Total calculated
    $203,558
    From this org
    $196,958
    From related orgs
    $0
    Other
    $6,600
    Hours/week
    20

    Schedule J breakdown matched by us

    Base
    $168,158
    Bonus
    $0
    Other
    $28,800
    Deferred
    $6,600
    Nontaxable benefits
    $0
    Filer's total
    $203,558
  • Wardle Katharine

    TREAS/VP OF FINANCE (FROM 09/23)

    Total calculated
    $147,516
    From this org
    $139,527
    From related orgs
    $0
    Other
    $7,989
    Hours/week
    40
  • Badr-El-Din Amin PhD

    TRUSTEE

    Total calculated
    $0
    Hours/week
    1
  • Brenner David

    TRUSTEE (FROM 2/8/23)

    Total calculated
    $0
    Hours/week
    1
  • Norrby Erling

    TRUSTEE

    Total calculated
    $0
    Hours/week
    1
  • Perry Meredith

    TRUSTEE (FROM 2/8/23)

    Total calculated
    $0
    Hours/week
    1
  • Ruggles Rudy

    TRUSTEE

    Total calculated
    $0
    Hours/week
    1
  • Wei Wu

    TRUSTEE

    Total calculated
    $0
    Hours/week
    1
  • Wolf Richmond

    TRUSTEE

    Total calculated
    $0
    Hours/week
    1

Compensation is as filed in Part VII: reportable pay from this organization and from related organizations, other compensation, and hours per week. The total, marked calculated, is our sum of the three dollar columns, with a blank column counted as $0; the form itself has no total. On a Form 990-EZ the columns are Part IV's instead, and on a Form 990-PF Part VIII's — compensation, contributions to benefit plans, and expense account — and the total sums those. A Schedule J breakdown is as filed: base pay, bonus, other, deferred compensation and nontaxable benefits from this organization, with any from related organizations beside each, and the filer's own total. It is shown with the Part VII listing of the same name on the same return. The form gives no key between the two, so that pairing is ours, and is marked matched by us.

Schedule J

Answered yes

  • 1a · Tax indemnification and gross-up payments
  • 1b · Written policy on the line-1a expenses
  • 2 · Substantiation required before reimbursing expenses
  • 3 · Compensation committee
  • 3 · Independent compensation consultant
  • 3 · Compensation survey or study
  • 3 · Approval by the board or compensation committee

Answered no

  • 4a · Severance or change-of-control payment
  • 4b · Supplemental nonqualified retirement plan
  • 4c · Equity-based compensation arrangement
  • 5a · Pay contingent on this organization's revenues
  • 5b · Pay contingent on a related organization's revenues
  • 6a · Pay contingent on this organization's net earnings
  • 6b · Pay contingent on a related organization's net earnings
  • 7 · Other non-fixed payments
  • 8 · Paid under the initial-contract exception

The filer's explanations (Part III)

PART I, LINE 1A
SCHEDULE J, PART I, LINE 1A: TAX INDEMIFICATION AND GROSS-UP PAYMENTS - CERTAIN AWARDS ARE GROSSED UP FOR INCOME TAX AND INCLUDED AS TAXABLE COMPENSATION.

Part I's answers as filed. A line not listed was left unanswered; on lines 1a and 3 that means the box was not checked.

Grants on this return

The 10 largest by cash amount. The API serves every itemized grant.

Provenance

Return type
form_990
Tax year
2023
Filed
5 November 2024
IRS schema version
2023v5.1
Source object
202443109349303919

Check it against the return as filed: the GivingTuesday Data Lake hosts a public copy of the original XML.

The source document this was parsed from is served over the API, which is where bulk and document access live.